The Clarke Group

Publications

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  • Currently displaying 141 - 160 of 167 publications
Author(s)
Publication title
Journal Name
Publication year
Can non-mechanical proteins withstand force? Stretching barnase by atomic force microscopy and molecular dynamics simulation.
RB Best, B Li, A Steward, V Daggett, J Clarke
Biophysical Journal
(2001)
81
(doi: 10.1016/s0006-3495(01)75881-x)
Two proteins with the same structure respond very differently to mutation: the role of plasticity in protein stability.
E Cota, SJ Hamill, SB Fowler, J Clarke
J Mol Biol
(2000)
302
(doi: 10.1006/jmbi.2000.4053)
Atomic force microscopy reveals the mechanical design of a modular protein
H Li, AF Oberhauser, SB Fowler, J Clarke, JM Fernandez
Proceedings of the National Academy of Sciences of the United States of America
(2000)
97
(doi: 10.1073/pnas.120048697)
The folding of an immunoglobulin-like greek key protein is defined by a common-core nucleus and regions constrained by topology
SJ Hamill, A Steward, J Clarke
J Mol Biol
(2000)
297
(doi: 10.1006/jmbi.2000.3517)
Towards a complete description of the structural and dynamic properties of the denatured state of barnase and the role of residual structure in folding11Edited by B. Honig
KB Wong, J Clarke, CJ Bond, JL Neira, SM Freund, AR Fersht, V Daggett
Journal of Molecular Biology
(2000)
296
(doi: 10.1006/jmbi.2000.3523)
Conservation of folding and stability within a protein family: the tyrosine corner as an evolutionary cul-de-sac.
SJ Hamill, E Cota, C Chothia, J Clarke
J Mol Biol
(2000)
295
(doi: 10.1006/jmbi.1999.3360)
Mechanical unfolding of titin is under kinetic control
H Li, A Oberhauser, S Fowler, J Clarke, PE Marszalek, JM Fernandez
BIOPHYSICAL JOURNAL
(2000)
78
Folding studies of immunoglobulin-like beta-sandwich proteins suggest that they share a common folding pathway
J Clarke, E Cota, SB Fowler, SJ Hamill
Structure
(1999)
7
(doi: 10.1016/S0969-2126(99)80181-6)
Mechanical and chemical unfolding of a single protein: A comparison
M Carrion-Vazquez, AF Oberhauser, SB Fowler, PE Marszalek, SE Broedel, J Clarke, JM Fernandez
Proceedings of the National Academy of Sciences
(1999)
96
(doi: 10.1073/pnas.96.7.3694)
The structure of a PKD domain from polycystin‐1: implications for polycystic kidney disease
M Bycroft, A Bateman, J Clarke, SJ Hamill, R Sandford, RL Thomas, C Chothia
The EMBO journal
(1999)
18
(doi: 10.1093/emboj/18.2.297)
AFM and chemical unfolding of a single protein follow the same pathway
M Carrion-Vazquez, AF Oberhauser, SB Fowler, PE Marszalek, SE Broedel, J Clarke, JM Fernandez
BIOPHYS J
(1999)
76
The dependence of chemical exchange on boundary selection in a fibronectin type III domain from human tenascin11Edited by P. E. Wright
AE Meekhof, SJ Hamill, VL Arcus, J Clarke, SM Freund
Journal of molecular biology
(1998)
282
(doi: 10.1006/jmbi.1998.2019)
The effect of boundary selection on the stability and folding of the third fibronectin type III domain from human tenascin
SJ Hamill, AE Meekhof, J Clarke
Biochemistry
(1998)
37
(doi: 10.1021/bi9801659)
Characterisation of urea-denatured states of an immunoglobulin superfamily domain by heteronuclear NMR
S Fong, M Bycroft, J Clarke, SM Freund
Journal of Molecular Biology
(1998)
278
(doi: 10.1006/jmbi.1998.1702)
Folding intermediates of wild-type and mutants of barnase. II. correlation of changes in equilibrium amide exchange kinetics with the population of the folding intermediate11Edited by J. Karn
PA Dalby, J Clarke, CM Johnson, AR Fersht
Journal of Molecular Biology
(1998)
276
(doi: 10.1006/jmbi.1997.1547)
Hydrogen exchange and protein folding.
J Clarke, LS Itzhaki
Curr Opin Struct Biol
(1998)
8
(doi: 10.1016/S0959-440X(98)80018-3)
A reply to Englander and Woodward
J Clarke, LS Itzhaki, AR Fersht
Trends in Biochemical Sciences
(1998)
23
(doi: 10.1016/s0968-0004(98)01280-8)
Characterization of residual structure in the thermally denatured state of barnase by simulation and experiment: description of the folding pathway.
CJ Bond, KB Wong, J Clarke, AR Fersht, V Daggett
Proceedings of the National Academy of Sciences
(1997)
94
(doi: 10.1073/pnas.94.25.13409)
Folding and stability of a fibronectin type III domain of human tenascin.
J Clarke, SJ Hamill, CM Johnson
Journal of Molecular Biology
(1997)
270
(doi: 10.1006/jmbi.1997.1147)
Thermodynamics of denaturation of mutants of barnase with disulfide crosslinks.
CM Johnson, M Oliveberg, J Clarke, AR Fersht
Journal of Molecular Biology
(1997)
268
(doi: 10.1006/jmbi.1997.0928)
Yusuf Hamied Department of Chemistry
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